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asari
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B
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C
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D
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E
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F
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G
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I
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J
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L
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M
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N
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P
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Q
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R
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T
A
add_sample() (asari.constructors.MassGrid method)
all_mass_paired_mapping() (in module asari.mass_functions)
analyze_single_sample() (in module asari.analyze)
annotate() (asari.experiment.ext_Experiment method)
annotate_user_featuretable() (in module asari.annotate_user_table)
append_orphans_to_epmCpds() (asari.experiment.ext_Experiment method)
asari.analyze
module
asari.annotate_user_table
module
asari.chromatograms
module
asari.constructors
module
asari.dashboard
module
asari.experiment
module
asari.json_encoder
module
asari.main
module
asari.mass_functions
module
asari.peaks
module
asari.samples
module
asari.workflow
module
audit_mass_track() (in module asari.peaks)
B
batch_deep_detect_elution_peaks() (in module asari.peaks)
batch_EIC_from_samples_() (in module asari.workflow)
bin_by_median() (in module asari.mass_functions)
bin_to_mass_tracks() (in module asari.chromatograms)
bin_track_mzs() (asari.constructors.MassGrid method)
build_chromatogram_by_mz_clustering() (in module asari.chromatograms)
build_chromatogram_intensity_aware() (in module asari.chromatograms)
build_composite_tracks() (asari.constructors.CompositeMap method)
build_grid_by_centroiding() (asari.constructors.MassGrid method)
build_grid_sample_wise() (asari.constructors.MassGrid method)
C
calculate_selectivity() (in module asari.mass_functions)
calibrate_sample_RT() (asari.constructors.CompositeMap method)
calibrate_sample_RT_by_standards() (asari.constructors.CompositeMap method)
check_close_mzs() (in module asari.mass_functions)
check_overlap_peaks() (in module asari.peaks)
clean_rt_calibration_points() (in module asari.chromatograms)
cleanup_peak_cluster() (in module asari.peaks)
cmapplot_mass_tracks() (in module asari.dashboard)
complete_mass_paired_mapping() (in module asari.mass_functions)
CompositeMap (class in asari.constructors)
compute_noise_by_flanks() (in module asari.peaks)
construct_mass_grid() (asari.constructors.CompositeMap method)
convert_dict_html() (in module asari.dashboard)
convert_dict_markdown() (in module asari.dashboard)
create_export_folders() (in module asari.workflow)
D
dashboard() (in module asari.dashboard)
db_mass_calibrate() (asari.experiment.ext_Experiment method)
default() (asari.json_encoder.NpEncoder method)
detect_evaluate_peaks_on_roi() (in module asari.peaks)
dwt_rt_calibrate() (in module asari.chromatograms)
E
epd_convert() (in module asari.dashboard)
estimate_min_peak_height() (in module asari.analyze)
evaluate_gaussian_peak_on_intensity_list() (in module asari.peaks)
evaluate_roi_peak_json_() (in module asari.peaks)
export_all() (asari.experiment.ext_Experiment method)
export_CMAP_pickle() (asari.experiment.ext_Experiment method)
export_feature_tables() (asari.experiment.ext_Experiment method)
export_log() (asari.experiment.ext_Experiment method)
export_peak_annotation() (asari.experiment.ext_Experiment method)
export_readme() (asari.experiment.ext_Experiment method)
export_reference_sample() (asari.constructors.CompositeMap method)
ext_estimate_min_peak_height() (in module asari.analyze)
ext_Experiment (class in asari.experiment)
extend_ROI() (in module asari.peaks)
extract_features_per_sample() (asari.constructors.CompositeMap method)
extract_massTracks_() (in module asari.chromatograms)
extract_single_track_fullrt_length() (in module asari.chromatograms)
F
find_a_good_peak() (in module asari.dashboard)
find_track_by_mz() (in module asari.dashboard)
flatten_tuplelist() (in module asari.mass_functions)
G
gap_divide_mz_cluster() (in module asari.mass_functions)
gaussian_function__() (in module asari.peaks)
generate_feature_table() (asari.constructors.CompositeMap method)
generate_qc_plot_pdf() (asari.experiment.ext_Experiment method)
get_file_masstrack_stats() (in module asari.analyze)
get_gaussian_peakarea_on_intensity_list() (in module asari.peaks)
get_masstracks_and_anchors() (asari.samples.SimpleSample method)
get_max_scan_number() (asari.experiment.ext_Experiment method)
get_mz_list() (in module asari.workflow)
get_peak_area_auc() (asari.constructors.CompositeMap method)
get_peak_area_gaussian() (asari.constructors.CompositeMap method)
get_peak_area_sum() (asari.constructors.CompositeMap method)
get_reference_rtimes() (asari.constructors.CompositeMap method)
get_reference_sample_id() (asari.experiment.ext_Experiment method)
get_reference_sample_instance() (asari.constructors.CompositeMap method)
get_rt_calibration_records() (asari.samples.SimpleSample method)
get_summary_panel() (in module asari.dashboard)
get_thousandth_bins() (in module asari.chromatograms)
get_valid_sample_ids() (asari.experiment.ext_Experiment method)
global_peak_detection() (asari.constructors.CompositeMap method)
goodness_fitting__() (in module asari.peaks)
I
identify_mass_peaks() (in module asari.mass_functions)
iter_peak_detection_parameters() (in module asari.peaks)
J
join() (asari.constructors.MassGrid method)
L
landmark_guided_mapping() (in module asari.mass_functions)
load_annotation_db() (asari.experiment.ext_Experiment method)
lowess_smooth_track() (in module asari.peaks)
M
main() (in module asari.main)
make_iter_parameters() (in module asari.workflow)
mass_paired_mapping() (in module asari.mass_functions)
mass_paired_mapping_with_correction() (in module asari.mass_functions)
MassGrid (class in asari.constructors)
merge_two_mass_tracks() (in module asari.chromatograms)
mock_rentention_alignment() (asari.constructors.CompositeMap method)
module
asari.analyze
asari.annotate_user_table
asari.chromatograms
asari.constructors
asari.dashboard
asari.experiment
asari.json_encoder
asari.main
asari.mass_functions
asari.peaks
asari.samples
asari.workflow
N
nn_cluster_by_mz_seeds() (in module asari.mass_functions)
NpEncoder (class in asari.json_encoder)
P
plot_xic() (in module asari.dashboard)
prepare_rt_alignment() (in module asari.dashboard)
process_all() (asari.experiment.ext_Experiment method)
process_project() (in module asari.workflow)
process_xics() (in module asari.workflow)
push_to_db() (asari.samples.SimpleSample method)
Q
quick_detect_unique_elution_peak() (in module asari.peaks)
R
read_project() (in module asari.dashboard)
read_project_dir() (in module asari.workflow)
register_samples() (in module asari.workflow)
remap_intensity_track() (in module asari.chromatograms)
remove_intermediate_pickles() (in module asari.workflow)
retrieve_from_db() (asari.samples.SimpleSample method)
rt_lowess_calibration() (in module asari.chromatograms)
rt_lowess_calibration_debug() (in module asari.chromatograms)
S
savitzky_golay_spline() (in module asari.chromatograms)
select_unique_compound_features() (asari.experiment.ext_Experiment method)
set_RT_reference() (asari.constructors.CompositeMap method)
SimpleSample (class in asari.samples)
single_sample_EICs_() (in module asari.workflow)
smooth_lowess() (in module asari.chromatograms)
smooth_moving_average() (in module asari.chromatograms)
stats_detect_elution_peaks() (in module asari.peaks)
T
track_to_peaks() (in module asari.dashboard)
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